CLASS-L Archives

November 2009

CLASS-L@LISTS.SUNYSB.EDU

Options: Use Monospaced Font
Show Text Part by Default
Condense Mail Headers

Message: [<< First] [< Prev] [Next >] [Last >>]
Topic: [<< First] [< Prev] [Next >] [Last >>]
Author: [<< First] [< Prev] [Next >] [Last >>]

Print Reply
Sender:
"Classification, clustering, and phylogeny estimation" <[log in to unmask]>
Date:
Tue, 10 Nov 2009 11:10:51 +1100
Reply-To:
"Classification, clustering, and phylogeny estimation" <[log in to unmask]>
Subject:
MIME-Version:
1.0
Content-Type:
text/plain; charset=iso-8859-1
In-Reply-To:
Content-Transfer-Encoding:
8bit
From:
Richard Wright <[log in to unmask]>
Parts/Attachments:
text/plain (271 lines)
The second of these coefficients is also available in the freely distributable package PAST.

Richard


----- Original Message ---------------

Subject: Re: Kulczynski's quantitative symmetric measure
   From: "F. James Rohlf" <[log in to unmask]>
   Date: Mon, 9 Nov 2009 12:22:06 -0500
     To: [log in to unmask]

>See:
>
> Kulczynski, S. 1927. Die Pflanzenassoziationen der Pienienen.  Bull.
>Intern. Acad. Pol. Sci. Lett. Cl. Sci. Math. Nat., B (Sci. Nat.), 1927
>(Suppl. 2):57-203.
>
> 
>
>There are actually two coefficients. The first is the number of positive
>matches divided by the number of mismatches. The second is the average of
>the proportion of matches for the first object and the proportion of matches
>for the second object.
>
> 
>
>They are available in the NTSYSpc software.
>
> 
>
>Jim
>
> 
>
>----------------------
>
>F. James Rohlf, Distinguished Professor
>
>Dept. Ecology and Evolution, Stony Brook University, NY 11794-5245
>
> 
>
>From: Classification, clustering, and phylogeny estimation
>[mailto:[log in to unmask]] On Behalf Of Shannon, William
>Sent: Monday, November 09, 2009 11:42 AM
>To: [log in to unmask]
>Subject: Kulczynski's quantitative symmetric measure
>
> 
>
>Who has heard of Kulczynski's quantitative symmetric measure.  Not finding a
>lot yet in my online search.  It was suggested as a possible measure for
>some genetic data we are generating.
>
> 
>
> 
>
> 
>
>Thank you.
>
> 
>
>Bill Shannon, PhD
>
>Associate Professor of Biostatistics in Medicine
>
>Washington University School of Medicine
>
>St. Louis, MO
>
> 
>
>314-454-8356
>
>[log in to unmask]
>
> 
>
>---------------------------------------------- CLASS-L list. Instructions:
>http://www.classification-society.org/csna/lists.html#class-l 
>
>
>----------------------------------------------
>CLASS-L list.
>Instructions: http://www.classification-society.org/csna/lists.html#class-l
>
>--Boundary_(ID_xXsnq9qNo3EaNLAcmZMHSw)
>Content-type: text/html; charset=US-ASCII
>Content-transfer-encoding: 7BIT
>
><html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
>
><head>
><meta http-equiv=Content-Type content="text/html; charset=us-ascii">
><meta name=Generator content="Microsoft Word 12 (filtered medium)">
><style>
><!--
> /* Font Definitions */
> @font-face
>	{font-family:"Cambria Math";
>	panose-1:2 4 5 3 5 4 6 3 2 4;}
>@font-face
>	{font-family:Calibri;
>	panose-1:2 15 5 2 2 2 4 3 2 4;}
>@font-face
>	{font-family:Tahoma;
>	panose-1:2 11 6 4 3 5 4 4 2 4;}
> /* Style Definitions */
> p.MsoNormal, li.MsoNormal, div.MsoNormal
>	{margin:0in;
>	margin-bottom:.0001pt;
>	font-size:11.0pt;
>	font-family:"Calibri","sans-serif";}
>a:link, span.MsoHyperlink
>	{mso-style-priority:99;
>	color:blue;
>	text-decoration:underline;}
>a:visited, span.MsoHyperlinkFollowed
>	{mso-style-priority:99;
>	color:purple;
>	text-decoration:underline;}
>span.EmailStyle17
>	{mso-style-type:personal;
>	font-family:"Calibri","sans-serif";
>	color:windowtext;}
>span.apple-style-span
>	{mso-style-name:apple-style-span;}
>span.EmailStyle19
>	{mso-style-type:personal-reply;
>	font-family:"Calibri","sans-serif";
>	color:#1F497D;}
>.MsoChpDefault
>	{mso-style-type:export-only;
>	font-size:10.0pt;}
>@page Section1
>	{size:8.5in 11.0in;
>	margin:1.0in 1.0in 1.0in 1.0in;}
>div.Section1
>	{page:Section1;}
>-->
></style>
><!--[if gte mso 9]><xml>
> <o:shapedefaults v:ext="edit" spidmax="1026" />
></xml><![endif]--><!--[if gte mso 9]><xml>
> <o:shapelayout v:ext="edit">
>  <o:idmap v:ext="edit" data="1" />
> </o:shapelayout></xml><![endif]-->
></head>
>
><body lang=EN-US link=blue vlink=purple>
>
><div class=Section1>
>
><p class=MsoNormal style='mso-margin-top-alt:3.75pt;margin-right:6.75pt;
>margin-bottom:0in;margin-left:6.0pt;margin-bottom:.0001pt;text-autospace:none'><span
>style='color:#1F497D'>See:<o:p></o:p></span></p>
>
><p class=MsoNormal style='mso-margin-top-alt:3.75pt;margin-right:6.75pt;
>margin-bottom:0in;margin-left:6.0pt;margin-bottom:.0001pt;text-autospace:none'>&nbsp;Kulczynski,
>S. 1927. Die Pflanzenassoziationen der Pienienen.&nbsp; Bull. Intern. Acad.
>Pol. Sci. Lett. Cl. Sci. Math. Nat., B (Sci. Nat.), 1927 (Suppl. 2):57-203.<o:p></o:p></p>
>
><p class=MsoNormal><span style='color:#1F497D'><o:p>&nbsp;</o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'>There are actually two
>coefficients. The first is the number of positive matches divided by the number
>of mismatches. The second is the average of the proportion of matches for the
>first object and the proportion of matches for the second object.<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'><o:p>&nbsp;</o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'>They are available in the
>NTSYSpc software.<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'><o:p>&nbsp;</o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'>Jim<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'><o:p>&nbsp;</o:p></span></p>
>
><div>
>
><p class=MsoNormal><span style='color:#1F497D'>----------------------<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'>F. James Rohlf, Distinguished
>Professor<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='color:#1F497D'>Dept. Ecology and Evolution,
>Stony Brook University, NY 11794-5245<o:p></o:p></span></p>
>
></div>
>
><p class=MsoNormal><span style='color:#1F497D'><o:p>&nbsp;</o:p></span></p>
>
><div>
>
><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in'>
>
><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span
>style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Classification,
>clustering, and phylogeny estimation [mailto:[log in to unmask]] <b>On
>Behalf Of </b>Shannon, William<br>
><b>Sent:</b> Monday, November 09, 2009 11:42 AM<br>
><b>To:</b> [log in to unmask]<br>
><b>Subject:</b> Kulczynski's quantitative symmetric measure<o:p></o:p></span></p>
>
></div>
>
></div>
>
><p class=MsoNormal><o:p>&nbsp;</o:p></p>
>
><p class=MsoNormal>Who has heard of <span class=apple-style-span><span
>style='font-size:10.5pt;font-family:"Arial","sans-serif"'>Kulczynski&#8217;s
>quantitative symmetric measure.&nbsp; Not finding a lot yet in my online
>search.&nbsp; It was suggested as a possible measure for some genetic data we
>are generating.<o:p></o:p></span></span></p>
>
><p class=MsoNormal><o:p>&nbsp;</o:p></p>
>
><p class=MsoNormal><o:p>&nbsp;</o:p></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif";color:black'><o:p>&nbsp;</o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif";color:black'>Thank
>you.</span><span style='font-family:"Arial","sans-serif";color:#1F497D'><o:p></o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif";color:#1F497D'><o:p>&nbsp;</o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif";color:black'>Bill
>Shannon, PhD</span><span style='font-family:"Arial","sans-serif";color:#1F497D'><o:p></o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif"'>Associate Professor
>of Biostatistics in Medicine<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif"'>Washington
>University School of Medicine<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif"'>St. Louis, MO<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif"'>&nbsp;<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif"'>314-454-8356<o:p></o:p></span></p>
>
><p class=MsoNormal><span style='font-family:"Arial","sans-serif";color:#1F497D'><a
>href="mailto:[log in to unmask]">[log in to unmask]</a><o:p></o:p></span></p>
>
><p class=MsoNormal><o:p>&nbsp;</o:p></p>
>
><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'>----------------------------------------------
>CLASS-L list. Instructions: http://www.classification-society.org/csna/lists.html#class-l
><o:p></o:p></span></p>
>
></div>
>
></body>
>
></html>
>----------------------------------------------
>CLASS-L list.
>Instructions: http://www.classification-society.org/csna/lists.html#class-l
>
>--Boundary_(ID_xXsnq9qNo3EaNLAcmZMHSw)--

----------------------------------------------
CLASS-L list.
Instructions: http://www.classification-society.org/csna/lists.html#class-l

ATOM RSS1 RSS2